Resources

Handouts, datasets, figure code, and reference material.

Handouts and PDFs

Put static files in a top-level resources/ folder and link to them directly. Quarto copies anything listed under resources: in _quarto.yml into docs/ untouched.

Example handout

Figure code

Every figure in the slide library is generated from published summary statistics by an R script kept next to the deck, in topics/<NN>-<topic>/data/. Edit the data frame at the top of the script, re-run, re-render.

# topics/12-Clonal-Hematopoiesis/data/make-figures.R
source("shared/vumc-colors.R")   # scale_fill_vumc(), scale_color_vumc()

Shared assets

Path	What it is
`_brand.yml`	VUMC colors and typography, applied to slides and site
`shared/scss/vumc-slides.scss`	Reveal.js theme — navy diagonal-V, wordmark
`shared/vumc-colors.R`	ggplot2 scales matching the brand palette
`shared/vumc-colors.py`	matplotlib equivalents
`_templates/slide-template.qmd`	Starting point for a new deck
`new-topic.sh`	Scaffolds `topics/NN-name/{slides,images,data}`

Reusing these materials

Clone the repository and render locally:

git clone https://github.com/<<username>>/<<repo>>.git
cd <<repo>>
quarto preview

You’ll need Quarto, R, and the packages listed in the DESCRIPTION or renv.lock file at the repository root.